Evolutionary trade-offs at the Arabidopsis WRR4A resistance locus underpin alternate Albugo candida race recognition specificities

The oomycete Albugo candida causes white rust of Brassicaceae, including vegetable and oilseed crops, and wild relatives such as Arabidopsis thaliana. Novel White Rust Resistance (WRR) genes from Arabidopsis enable new insights into plant/parasite co-evolution. WRR4A from Arabidopsis accession Columbia (Col-0) provides resistance to many but not all white rust races, and encodes a nucleotide-binding, leucine-rich repeat immune receptor. Col-0 WRR4A resistance is broken by AcEx1, an isolate of A. candida. We identified an allele of WRR4A in Arabidopsis accession Øystese-0 (Oy-0) and other accessions that confers full resistance to AcEx1. WRR4A^Oy-0 carries a C-terminal extension required for recognition of AcEx1, but reduces recognition of several effectors recognized by the WRR4A^Col-0 allele. WRR4A^Oy-0 confers full resistance to AcEx1 when expressed in the oilseed crop Camelina sativa.     

Exposure to parasites increases promiscuity in a freshwater snail

Under the Red Queen hypothesis, outcrossing can produce genetically variable progeny, which may be more resistant, on average, to locally adapted parasites. Mating with multiple partners may enhance this resistance by further increasing the genetic variation among offspring. We exposed Potamopyrgus antipodarum to the eggs of a sterilizing, trematode parasite and tested whether this altered mating behaviour. We found that exposure to parasites increased the number of snail mating pairs and the total number of different mating partners for both males and females. Thus, our results suggest that, in host populations under parasite-mediated selection, exposure to infective propagules increases the rate of mating and the number of mates.     

Adaptive noise

In biology, noise implies error and disorder and is therefore something which organisms may seek to minimize and mitigate against. We argue that such noise can be adaptive. Recent studies have shown that gene expression can be noisy, noise can be genetically controlled, genes and gene networks vary in how noisy they are and noise generates phenotypic differences among genetically identical cells. Such phenotypic differences can have fitness benefits, suggesting that evolution can shape noise and that noise may be adaptive. For example, gene networks can generate bistable states resulting in phenotypic diversity and switching among individual cells of a genotype, which may be a bet hedging strategy. Here, we review the sources of noise in gene expression, the extent to which noise in biological systems may be adaptive and suggest that applying evolutionary rigour to the study of noise is necessary to fully understand organismal phenotypes.     

Theoretical framework of population genetics with somatic mutations taken into account: application to copy number variations in humans

Traditionally, population genetics focuses on the dynamics of frequencies of alleles acquired by mutations on germ-lines, because only such mutations are heritable. Typical genotyping experiments, however, use DNA from some somatic tissues such as blood, which harbors somatic mutations at the current generation in addition to germ-line mutations accumulated since the most recent common ancestor of the sample. This common practice may sometimes cause erroneous interpretations of polymorphism data, unless we properly understand the role of somatic mutations in population genetics. We here introduce a very basic theoretical framework of population genetics with somatic mutations taken into account. It is easy to imagine that somatic mutations at the current generation simply add individual-specific variations, as errors in mutation detection do. Our theory quantifies this increment under various conditions. We find that the major contribution of somatic mutations plus errors is to very rare variants, particularly to singletons. The relative contribution is markedly large when mutations are deleterious. Because negative selection also increases rare variants, it is important to distinguish the roles of these mutually confounding factors when we interpret the data, even after correcting for demography. We apply this theory to human copy number variations (CNVs), for which the composite effect of somatic mutations and errors may not be negligible. Using genome-wide CNV data, we demonstrate how the joint action of the two factors, selection and somatic mutations plus errors, shapes the observed pattern of polymorphism.     

Craniofacial ontogeny in centrosaurine dinosaurs (Ornithischia: Geratopsidae): taxonomic and behavioral implications

Centrosaurine ceratopsians are characterized by well developed nasal horncores or bosses, relatively abbreviated supraorbital horncores or bosses, and adorned parietosquamosal frills. Recent study of several paucispecific (low diversity) bonebed assemblages in Alberta and Montana has contributed greatly to our understanding of ontogenetic and taxonomic variation in the skulls of centrosaurines. Relative age determination of centrosaurines is now possible through examination of ontogenetic change in several characters, including the surface bone morphology of specific skeletal elements. The within-group taxonomy of centrosaurines is based almost entirely on characters of the skull roof, relating particularly to horns and frills. Juvenile and sub-adult centrosaurines are characterized by relatively simple, unadorned skulls compared to their adult counterparts. As in numerous living taxa, the cranial ornaments of centrosaurines developed late in ontogeny, as individuals approached or attained adult size. An important implication arising directly from this study is that juvenile and sub-adult centrosaurines are difficult to distinguish taxonomically at the specific level. Two monospecific genera represented only by immature materials, Brachyceratops montanensis and Monoclonius crassus , cannot be defended and should be considered nomina dubia . The late ontogenetic development and diverse taxonomic variation of horn and frill morphologies support the contention diat these structures are best interpreted as reproductive characters employed in mate competition.     

Quantitative evaluation of temporal similarity in abundance of animal species

Summary A quantitative method is suggested for measuring the similarity of seasonal abundance patterns of different animal species. The method was applied to two sets of field data and produced biologically meaningful and interesting results.     

Concordant clines and significant correlation between floral and pollen characters in Asarum heterotropoides var. heterotropoides (Aristolochiaceae)

To examine geographic differentiation in Asarum heterotropoides var. heterotropoides in Hokkaido Is. in the northern Japan, in which two putative cryptic species have been suspected to exist, extensive and detailed morphological research on 794 individuals from 44 populations throughout Hokkaido Is. was performed. Among the characters examined, the angle between and tip shape of the calyx lobes and the supratecta of the pollen grains were significantly correlated and were found in similar geographic clines. Among them, the pollen showed two discrete states in almost distinct distribution. Multidimensional scaling analysis showed that individuals within each of the two pollen types had different trends in flower characters. Consequently, we assumed a cline from south to north on Hokkaido Is. For the causes of the cline, the two hypotheses were proposed, primary geographic differentiation or extensive introgressive hybridization between two distinct geographical species existing in the past.     

Electrophoretic analysis of Antarctic fish from South Georgia

White muscle samples of Antarctic fish ( Notothenia rossii, N., neglecta. N. gibbe-rifrons and Chaenocephalus (aceratus ) were subjected to electrophoretic tests. lsoelectric focusing of general muscle proteins provides a quick method of iden-tyfying species. Six muscle enzymes were resolved by horizontal starch gel clectrophoresis. These are presumed to be the products of ten independent gene loci. Coefficients of genetic distance were calculated and substantially agree with the conventional taxnomy. Levels of genetic variability are within the normal range for marine teleosts. Two polymorphic enzymes. GPI and PGM. might prove useful as 'genetic tags' for stock identification.     

Preliminary studies of monoterpenoid variability in Satureja douglasii

Monoterpenoid composition of samples from 10 populations of Satureja douglasii in a 250-ha area were analyzed in Spring 1974. Two distinct compositional types were found: Type A contained large amounts of limonene and carvone but very small quantites of piperitenone, piperitone, pulegone and isomenthone (3-oxy compounds), whereas Type B was essentially the reverse. This variation is attributed to a genotypic difference. The amounts of 3-oxy compounds varied greatly among the Type B populations. Increasing shade conditions were correlated with increased amounts of the more reduced compounds isomenthone and piperitone. Clonal lines were established from two Type B populations whose habitats represented extremes of sun and shade conditions. The two clonal lines, which had very different compositions in the field, produced similar oils under controlled conditions. Growth under different temperature regimes had little effect on composition. Developmental changes in composition implied the precursor-product relationships piperitenone→piperitone and pulegone→isomenthone. The data suggest that S douglasii monoterpenoid compositional patterns are significantly influenced by genetic and environmental factors (probably light intensity) as well as developmental processes.